Detailed information of SNP:
|
SNP ID:
sf0618028964(Gbrowse)
Chromosome: chr06 Position: 18028964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 92.62% | 7.38% |
| All Indica | 794 | 87.91% | 12.09% |
| All Japonica | 468 | 99.79% | 0.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 80.65% | 19.35% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 311 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618028964 | G->A | LOC_Os06g30990(LOC_Os06g30990.1) | Synonymous |