Detailed information of SNP:
|
SNP ID:
sf0618029195(Gbrowse)
Chromosome: chr06 Position: 18029195 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 75.34% | 24.66% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 486 | 33.95% | 66.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 327 | 36.09% | 63.91% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618029195 | A->G | LOC_Os06g30990(LOC_Os06g30990.1) | Synonymous |