Detailed information of SNP:
|
SNP ID:
sf0618035829(Gbrowse)
Chromosome: chr06 Position: 18035829 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 71.98% | 28.02% |
| All Indica | 795 | 96.86% | 3.14% |
| All Japonica | 488 | 27.66% | 72.34% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 327 | 29.97% | 70.03% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618035829 | T->C | LOC_Os06g31000(LOC_Os06g31000.1) | INTRON |