Detailed information of SNP:
|
SNP ID:
sf0618063177(Gbrowse)
Chromosome: chr06 Position: 18063177 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 81.61% | 18.39% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 483 | 51.35% | 48.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 329 | 58.36% | 41.64% |
| Tropical Japonica | 89 | 19.10% | 80.90% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618063177 | G->A | LOC_Os06g31050(LOC_Os06g31050.1) | INTRON |