Detailed information of SNP:
|
SNP ID:
sf0618124428(Gbrowse)
Chromosome: chr06 Position: 18124428 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 55.56% | 44.44% |
| All Indica | 784 | 86.48% | 13.52% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 86.10% | 13.90% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 205 | 87.32% | 12.68% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618124428 | G->A | INTERGENIC | None |