Detailed information of SNP:
|
SNP ID:
sf0618167180(Gbrowse)
Chromosome: chr06 Position: 18167180 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 799 | 81.35% | 18.65% |
| All Japonica | 497 | 47.89% | 52.11% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618167180 | G->A | INTERGENIC | None |