Detailed information of SNP:
|
SNP ID:
sf0618171244(Gbrowse)
Chromosome: chr06 Position: 18171244 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.22% | 25.78% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 50.30% | 49.70% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618171244 | A->G | LOC_Os06g31240(LOC_Os06g31240.1) | Synonymous |