Detailed information of SNP:
|
SNP ID:
sf0618199343(Gbrowse)
Chromosome: chr06 Position: 18199343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 88.88% | 11.12% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 420 | 65.95% | 34.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 273 | 56.78% | 43.22% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 54 | 57.41% | 42.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618199343 | C->T | INTERGENIC | None |