Detailed information of SNP:
SNP ID:
sf0618220573(Gbrowse)
Chromosome: chr06 Position: 18220573 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 96.90% | 3.10% |
All Indica | 799 | 97.37% | 2.63% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 94.03% | 5.97% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 95.77% | 4.23% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0618220573 | G->A | LOC_Os06g31310(LOC_Os06g31310.1) | Synonymous |