Detailed information of SNP:
|
SNP ID:
sf0618222781(Gbrowse)
Chromosome: chr06 Position: 18222781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 97.10% | 2.90% |
| All Indica | 793 | 95.46% | 4.54% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618222781 | C->T | LOC_Os06g31310(LOC_Os06g31310.1) | Synonymous |