Detailed information of SNP:
|
SNP ID:
sf0618223051(Gbrowse)
Chromosome: chr06 Position: 18223051 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 60.58% | 39.42% |
| All Indica | 737 | 76.66% | 23.34% |
| All Japonica | 492 | 33.94% | 66.06% |
| Aus | 61 | 81.97% | 18.03% |
| Indica I | 345 | 73.91% | 26.09% |
| Indica II | 194 | 78.35% | 21.65% |
| Indica Intermediate | 198 | 79.80% | 20.20% |
| Temperate Japonica | 333 | 43.84% | 56.16% |
| Tropical Japonica | 91 | 7.69% | 92.31% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618223051 | T->C | LOC_Os06g31310(LOC_Os06g31310.1) | INTRON |