Detailed information of SNP:
|
SNP ID:
sf0618235230(Gbrowse)
Chromosome: chr06 Position: 18235230 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 81.76% | 18.24% |
| All Indica | 768 | 90.36% | 9.64% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 365 | 89.86% | 10.14% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 192 | 90.62% | 9.38% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618235230 | A->G | INTERGENIC | None |