Detailed information of SNP:
|
SNP ID:
sf0618249319(Gbrowse)
Chromosome: chr06 Position: 18249319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 97.14% | 2.86% |
| All Indica | 780 | 95.51% | 4.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 366 | 96.45% | 3.55% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618249319 | G->A | LOC_Os06g31350(LOC_Os06g31350.1) | Synonymous |