Detailed information of SNP:
|
SNP ID:
sf0618286418(Gbrowse)
Chromosome: chr06 Position: 18286418 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 97.29% | 2.71% |
| All Indica | 785 | 95.80% | 4.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618286418 | G->A | LOC_Os06g31420(LOC_Os06g31420.1) | Non-Synonymous SNP |