Detailed information of SNP:
|
SNP ID:
sf0618295550(Gbrowse)
Chromosome: chr06 Position: 18295550 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 96.77% | 3.23% |
| All Indica | 760 | 95.53% | 4.47% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 361 | 97.51% | 2.49% |
| Indica II | 202 | 91.58% | 8.42% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618295550 | T->C | LOC_Os06g31430(LOC_Os06g31430.1) | INTRON |