Detailed information of SNP:
|
SNP ID:
sf0618315814(Gbrowse)
Chromosome: chr06 Position: 18315814 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 92.63% | 7.37% |
| All Indica | 735 | 87.48% | 12.52% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 57 | 87.72% | 12.28% |
| Indica I | 354 | 88.42% | 11.58% |
| Indica II | 185 | 88.11% | 11.89% |
| Indica Intermediate | 196 | 85.20% | 14.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618315814 | T->A | LOC_Os06g31480(LOC_Os06g31480.1) | INTRON |