Detailed information of SNP:
|
SNP ID:
sf0618321029(Gbrowse)
Chromosome: chr06 Position: 18321029 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 89.25% | 10.75% |
| All Indica | 767 | 81.36% | 18.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 355 | 70.42% | 29.58% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618321029 | C->T | LOC_Os06g31480(LOC_Os06g31480.1) | Synonymous |