Detailed information of SNP:
|
SNP ID:
sf0618347786(Gbrowse)
Chromosome: chr06 Position: 18347786 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.62% | 4.38% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618347786 | G->A | LOC_Os06g31550(LOC_Os06g31550.1) | Non-Synonymous SNP |