Detailed information of SNP:
|
SNP ID:
sf0618360632(Gbrowse)
Chromosome: chr06 Position: 18360632 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 93.31% | 6.69% |
| All Indica | 776 | 90.98% | 9.02% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 365 | 92.60% | 7.40% |
| Indica II | 208 | 88.46% | 11.54% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618360632 | C->T | LOC_Os06g31570(LOC_Os06g31570.1) | INTRON |