Detailed information of SNP:
|
SNP ID:
sf0618371056(Gbrowse)
Chromosome: chr06 Position: 18371056 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1210 | 84.79% | 15.21% |
| All Indica | 615 | 72.68% | 27.32% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 53 | 86.79% | 13.21% |
| Indica I | 286 | 75.17% | 24.83% |
| Indica II | 167 | 70.06% | 29.94% |
| Indica Intermediate | 162 | 70.99% | 29.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618371056 | C->T | LOC_Os06g31589(LOC_Os06g31589.1) | Synonymous |