Detailed information of SNP:
|
SNP ID:
sf0618380090(Gbrowse)
Chromosome: chr06 Position: 18380090 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1176 | 68.45% | 31.55% |
| All Indica | 599 | 50.25% | 49.75% |
| All Japonica | 480 | 93.96% | 6.04% |
| Aus | 49 | 51.02% | 48.98% |
| Indica I | 275 | 50.18% | 49.82% |
| Indica II | 156 | 48.72% | 51.28% |
| Indica Intermediate | 168 | 51.79% | 48.21% |
| Temperate Japonica | 326 | 94.79% | 5.21% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618380090 | G->A | LOC_Os06g31620(LOC_Os06g31620.1) | Synonymous |