Detailed information of SNP:
|
SNP ID:
sf0618383357(Gbrowse)
Chromosome: chr06 Position: 18383357 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 91.03% | 8.97% |
| All Indica | 774 | 84.63% | 15.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 364 | 84.89% | 15.11% |
| Indica II | 204 | 82.84% | 17.16% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618383357 | C->T | LOC_Os06g31630(LOC_Os06g31630.1) | Synonymous |