Detailed information of SNP:
|
SNP ID:
sf0618432398(Gbrowse)
Chromosome: chr06 Position: 18432398 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 96.99% | 3.01% |
| All Indica | 777 | 95.62% | 4.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 368 | 98.10% | 1.90% |
| Indica II | 204 | 89.71% | 10.29% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618432398 | T->C | LOC_Os06g31730(LOC_Os06g31730.1) | Synonymous |