Detailed information of SNP:
|
SNP ID:
sf0618462867(Gbrowse)
Chromosome: chr06 Position: 18462867 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 87.97% | 12.03% |
| All Indica | 793 | 87.26% | 12.74% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618462867 | T->C | INTERGENIC | None |