Detailed information of SNP:
|
SNP ID:
sf0618468764(Gbrowse)
Chromosome: chr06 Position: 18468764 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1200 | 65.17% | 34.83% |
| All Indica | 607 | 41.02% | 58.98% |
| All Japonica | 490 | 98.16% | 1.84% |
| Aus | 53 | 22.64% | 77.36% |
| Indica I | 274 | 38.32% | 61.68% |
| Indica II | 162 | 37.04% | 62.96% |
| Indica Intermediate | 171 | 49.12% | 50.88% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618468764 | C->A | INTERGENIC | None |