Detailed information of SNP:
|
SNP ID:
sf0618470060(Gbrowse)
Chromosome: chr06 Position: 18470060 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 95.70% | 4.30% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 410 | 86.83% | 13.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 82.56% | 17.44% |
| Tropical Japonica | 75 | 98.67% | 1.33% |
| Japonica Intermediate | 54 | 92.59% | 7.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618470060 | T->G | INTERGENIC | None |