Detailed information of SNP:
|
SNP ID:
sf0618474537(Gbrowse)
Chromosome: chr06 Position: 18474537 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 90.35% | 9.65% |
| All Indica | 741 | 92.85% | 7.15% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 355 | 94.37% | 5.63% |
| Indica II | 200 | 95.00% | 5.00% |
| Indica Intermediate | 186 | 87.63% | 12.37% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618474537 | T->C | LOC_Os06g31820(LOC_Os06g31820.1) | INTRON |