Detailed information of SNP:
|
SNP ID:
sf0618476960(Gbrowse)
Chromosome: chr06 Position: 18476960 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 58.32% | 41.68% |
| All Indica | 780 | 89.36% | 10.64% |
| All Japonica | 493 | 5.68% | 94.32% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 361 | 90.58% | 9.42% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618476960 | T->G | LOC_Os06g31820(LOC_Os06g31820.1) | Non-Synonymous SNP |