Detailed information of SNP:
|
SNP ID:
sf0618477690(Gbrowse)
Chromosome: chr06 Position: 18477690 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.79% | 25.21% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 496 | 35.08% | 64.92% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 43.41% | 56.59% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618477690 | A->G | LOC_Os06g31820(LOC_Os06g31820.1) | INTRON |