Detailed information of SNP:
|
SNP ID:
sf0618477946(Gbrowse)
Chromosome: chr06 Position: 18477946 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 95.86% | 4.14% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 411 | 90.02% | 9.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 99.65% | 0.35% |
| Tropical Japonica | 78 | 55.13% | 44.87% |
| Japonica Intermediate | 50 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618477946 | C->T | INTERGENIC | None |