Detailed information of SNP:
|
SNP ID:
sf0618478385(Gbrowse)
Chromosome: chr06 Position: 18478385 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 51.15% | 48.85% |
| All Indica | 770 | 79.61% | 20.39% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 78.27% | 21.73% |
| Indica II | 206 | 83.98% | 16.02% |
| Indica Intermediate | 205 | 77.56% | 22.44% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618478385 | G->A | INTERGENIC | None |