Detailed information of SNP:
|
SNP ID:
sf0618486502(Gbrowse)
Chromosome: chr06 Position: 18486502 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 88.97% | 11.03% |
| All Indica | 778 | 89.72% | 10.28% |
| All Japonica | 496 | 89.11% | 10.89% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 361 | 91.14% | 8.86% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 334 | 86.53% | 13.47% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618486502 | A->G | LOC_Os06g31830(LOC_Os06g31830.1) | Non-Synonymous SNP |