Detailed information of SNP:
|
SNP ID:
sf0618486884(Gbrowse)
Chromosome: chr06 Position: 18486884 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 94.03% | 5.97% |
| All Indica | 789 | 97.34% | 2.66% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618486884 | T->C | INTERGENIC | None |