Detailed information of SNP:
|
SNP ID:
sf0618500227(Gbrowse)
Chromosome: chr06 Position: 18500227 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 98.08% | 1.92% |
| All Indica | 786 | 97.71% | 2.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618500227 | A->C | INTERGENIC | None |