Detailed information of SNP:
|
SNP ID:
sf0618507339(Gbrowse)
Chromosome: chr06 Position: 18507339 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.86% | 2.14% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 486 | 96.50% | 3.50% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 326 | 95.09% | 4.91% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618507339 | T->C | INTERGENIC | None |