Detailed information of SNP:
|
SNP ID:
sf0618508090(Gbrowse)
Chromosome: chr06 Position: 18508090 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 51.07% | 48.93% |
| All Indica | 746 | 83.51% | 16.49% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 61 | 63.93% | 36.07% |
| Indica I | 342 | 83.04% | 16.96% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 196 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618508090 | T->G | INTERGENIC | None |