Detailed information of SNP:
|
SNP ID:
sf0618515903(Gbrowse)
Chromosome: chr06 Position: 18515903 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 66.86% | 33.14% |
| All Indica | 789 | 93.41% | 6.59% |
| All Japonica | 491 | 18.74% | 81.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 94.28% | 5.72% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 330 | 22.42% | 77.58% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618515903 | G->A | LOC_Os06g31870(LOC_Os06g31870.1) | INTRON |