Detailed information of SNP:
|
SNP ID:
sf0618516602(Gbrowse)
Chromosome: chr06 Position: 18516602 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 67.76% | 32.24% |
| All Indica | 790 | 94.43% | 5.57% |
| All Japonica | 489 | 19.22% | 80.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 327 | 22.63% | 77.37% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618516602 | C->T | LOC_Os06g31870(LOC_Os06g31870.1) | INTRON |