Detailed information of SNP:
|
SNP ID:
sf0618516703(Gbrowse)
Chromosome: chr06 Position: 18516703 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 70.21% | 29.79% |
| All Indica | 790 | 97.22% | 2.78% |
| All Japonica | 480 | 20.62% | 79.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 320 | 24.69% | 75.31% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618516703 | A->T | LOC_Os06g31870(LOC_Os06g31870.1) | Non-Synonymous SNP |