Detailed information of SNP:
|
SNP ID:
sf0618521107(Gbrowse)
Chromosome: chr06 Position: 18521107 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 70.46% | 29.54% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 481 | 24.12% | 75.88% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 321 | 28.97% | 71.03% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618521107 | A->G | LOC_Os06g31880(LOC_Os06g31880.1) | INTRON |