Detailed information of SNP:
|
SNP ID:
sf0618526732(Gbrowse)
Chromosome: chr06 Position: 18526732 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 75.48% | 24.52% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 494 | 35.02% | 64.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 43.54% | 56.46% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618526732 | T->G | INTERGENIC | None |