Detailed information of SNP:
|
SNP ID:
sf0618533603(Gbrowse)
Chromosome: chr06 Position: 18533603 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 53.97% | 46.03% |
| All Indica | 751 | 29.16% | 70.84% |
| All Japonica | 490 | 96.12% | 3.88% |
| Aus | 65 | 20.00% | 80.00% |
| Indica I | 345 | 32.17% | 67.83% |
| Indica II | 204 | 23.04% | 76.96% |
| Indica Intermediate | 202 | 30.20% | 69.80% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618533603 | G->A | INTERGENIC | None |