Detailed information of SNP:
|
SNP ID:
sf0618535720(Gbrowse)
Chromosome: chr06 Position: 18535720 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 80.40% | 19.60% |
| All Indica | 711 | 67.23% | 32.77% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 56 | 76.79% | 23.21% |
| Indica I | 335 | 77.61% | 22.39% |
| Indica II | 186 | 48.39% | 51.61% |
| Indica Intermediate | 190 | 67.37% | 32.63% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618535720 | T->C | INTERGENIC | None |