Detailed information of SNP:
|
SNP ID:
sf0618665333(Gbrowse)
Chromosome: chr06 Position: 18665333 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 69.32% | 30.68% |
| All Indica | 694 | 44.81% | 55.19% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 318 | 53.14% | 46.86% |
| Indica II | 191 | 36.65% | 63.35% |
| Indica Intermediate | 185 | 38.92% | 61.08% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618665333 | A->C | INTERGENIC | None |