Detailed information of SNP:
|
SNP ID:
sf0618737445(Gbrowse)
Chromosome: chr06 Position: 18737445 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.25% | 39.75% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 493 | 4.46% | 95.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 331 | 3.32% | 96.68% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618737445 | C->T | INTERGENIC | None |