Detailed information of SNP:
|
SNP ID:
sf0618817866(Gbrowse)
Chromosome: chr06 Position: 18817866 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 65.55% | 34.45% |
| All Indica | 795 | 95.35% | 4.65% |
| All Japonica | 482 | 13.90% | 86.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 321 | 15.26% | 84.74% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618817866 | C->T | INTERGENIC | None |