Detailed information of SNP:
|
SNP ID:
sf0618820839(Gbrowse)
Chromosome: chr06 Position: 18820839 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 66.43% | 33.57% |
| All Indica | 794 | 95.97% | 4.03% |
| All Japonica | 490 | 16.53% | 83.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 329 | 19.15% | 80.85% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618820839 | T->A | INTERGENIC | None |