Detailed information of SNP:
SNP ID:
sf0618885443(Gbrowse)
Chromosome: chr06 Position: 18885443 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1417 | 89.13% | 10.87% |
All Indica | 798 | 99.25% | 0.75% |
All Japonica | 496 | 70.16% | 29.84% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 98.66% | 1.34% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 334 | 58.98% | 41.02% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 85.29% | 14.71% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0618885443 | T->C | INTERGENIC | None |