Detailed information of SNP:
|
SNP ID:
sf0618902532(Gbrowse)
Chromosome: chr06 Position: 18902532 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 75.67% | 24.33% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 491 | 36.25% | 63.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 333 | 45.35% | 54.65% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618902532 | T->C | LOC_Os06g32500(LOC_Os06g32500.1) | INTRON |