Detailed information of SNP:
|
SNP ID:
sf0618905584(Gbrowse)
Chromosome: chr06 Position: 18905584 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 93.67% | 6.33% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 469 | 81.88% | 18.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 312 | 74.68% | 25.32% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618905584 | G->A | LOC_Os06g32500(LOC_Os06g32500.1) | INTRON |